Cascadia
===================================

**A transformer model for de novo sequencing of data-independent acquisition mass spectrometry data**

.. image:: cascadia-graphical-abstract.png
  :width: 600
  :alt: Cascadia graphical abstract

Contents
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.. toctree::
    Getting Started <getting_started.md>
    File Formats <file_formats.md>
    Usage <usage.md>

If you use Casanovo in your work, please cite the following publication:

Sanders, Justin, et al. ‘A Transformer Model for de Novo Sequencing of Data-Independent Acquisition Mass Spectrometry Data’. bioRxiv, Cold Spring Harbor Laboratory, 2024, https://doi.org/10.1101/2024.06.03.597251.